PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011046-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 161aa    MW: 17742.4 Da    PI: 9.247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011046-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013118140123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  NNU_011046-RA 118 WKCDKCSKKYAVQSDWKAHSKTC 140
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.89E-5105139No hitNo description
Gene3DG3DSA:3.30.160.602.3E-5106139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MPVELENSSA ITVSTTSVEA SVSSSSNQVA LSSMTTKKKR NLPRTSDSCA RSAIKGSNEI  60
KTCNFTTEDT IFLGSLGICK RVYVCPEPSC VHHDSSRALG NLMGIKKHLC RKHGEKKWKC  120
DKCSKKYAVQ SDWKAHSKTC GTREYKCDCG TLFFLGFFSL P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271958.28e-58PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9SCQ62e-53IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLF6GWY39e-58F6GWY3_VITVI; Putative uncharacterized protein
STRINGVIT_04s0023g01430.t013e-57(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.16e-36indeterminate(ID)-domain 5